PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_016398-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 260aa    MW: 28019.3 Da    PI: 5.9825
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_016398-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.80.00035109131123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_016398-RA 109 FSCNYCQRKFFSSQALGGHQNAH 131
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.72E-6107136No hitNo description
PROSITE profilePS5015711.344109136IPR007087Zinc finger, C2H2
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MKASNCEFEA EAVSEDESDI SSQVASNISI HGASPEPSKD TTISTCLTNL MKLEPNMRPI  60
SLNLSLSFKN SDSDMGGTKE SVGLSLSSTS ESSSEVAPHT PSTSFPRVFS CNYCQRKFFS  120
SQALGGHQNA HKRERTLAKR ALRMGIFSER YASLASLPLH GSAFRSLGIK AHSMHHGIAA  180
PERPPEIKTG ARFEHSYFGP PMLLEDDDAE LFWPGSFQQV PEGIGSHPGF ELAGSSSFNF  240
VAVAPAPEAD SSPPDLTLRL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010271186.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_010271187.10.0PREDICTED: zinc finger protein 4-like
RefseqXP_010271188.10.0PREDICTED: zinc finger protein 4-like
SwissprotQ392632e-51ZFP4_ARATH; Zinc finger protein 4
TrEMBLA0A067F4031e-103A0A067F403_CITSI; Uncharacterized protein
TrEMBLV4UB171e-103V4UB17_9R
STRINGPOPTR_0008s13730.13e-99(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66140.12e-46zinc finger protein 4